Sooner you get guide interpretation of mass spectra, by fred w. Before we talk about interpreting spectra, lets discuss how they are generated in the first place. Mass spectrometry based proteomics is already an integrated. This resource is aimed at a level students being introduced to mass spectrometry and interpreting mass spectra to determined the relative atomic mass of an.
Mass spectrometry allows us to measure the masses of atoms and molecules, and also obtain information about their chemical structure. In heterolytic cleavage, an electron pair moves together to the charged atom. Set ms1 to filter fragment of interest, dissociate further in q collisionally and mass analyze by scanning with. Interpreting esi spectra the y axis is labeled relative intensity. In addition, amdis can also be used to build a user defined library, either from gcms data files, or from the data in the nist mass spectral database. Look for the peak with the highest value for mz, and that value is the relative formula mass of the compound. As youve seen, the mass spectrum of even very similar organic compounds will be quite different because of the different fragmentation patterns that can occur.
Thats always the case when you are interpreting these mass spectra. Interpreting topdown mass spectra using spectral alignment. Nists webbook which includes ir, uvvis and mass spectra of many organic compounds. Platform independent no matter what operating system you are using, mmass works on ms windows, apples mac os x and linux platforms as well. Note that modern spectrometers actually indicate that neon has a third isotope.
The technique provides a rapid, semiautomated analysis of the sample and typically yields sufficient information to identify the compounds in question. Once a chemist is able to determine the identity of a compound from a mass spectrum, their problem has been solved. Mass spectroscopy mass spectroscopy is a technique causing the formation of the gaseous ions with or without fragmentation. It is commonly used for the identification of organic compounds from electron ionization mass spectrometry. Package interpretmsspectrum may 3, 2018 type package title interpreting high resolution mass spectra version 1. The emphasis is on giving practical advice which is specific, easy to follow and in a format which will encourage its use on the job. However, the application of gcms for drug analysis does have its limitations. Faculty of pharmacy uttarakhand technical university suddhowala, dehradun 248015 india. Chapter 2 fragmentation and interpretation of spectra 2. In addition, amdis can be used to build a user defined library, either from gcms data files, or from the data in the nist mass spectral database. Stepbystep interpretation of an ir spectrum prashant gahtori, phd. Andi is based on netcdf which is a software tool library for writing and reading data files.
In the past 30 years, mass spectrometry ms has undergone a spectacular devel. For the analytical chemist, a mass spectrum is useful for two applications. The mass spectrum is a display of unique ions present at a specific time in the experiment, whether that duration represents a longterm ablation of a solid sample in the source or the passage of a transient gc or lc peak. First, the fundamental notions of mass spectrometry are explained, so that the reader can easily cover this chapter graphs, main pick, molecular ion, illogical pick, nitrogen rule, etc. A read is counted each time someone views a publication summary such as the title, abstract, and list of authors, clicks on a figure, or views or downloads the fulltext. Mass spectrometry mass spectrometry is the most accurate method for determining the molecular mass of the compound and its elemental composition.
Each of the vendors of these mass spectrometers uses a different proprietary binary output file format, which has hindered data sharing and the development of open source software for downstream analysis. Shows you how to get the information out of a mass spectrum and use it to help suggest the identity of an unidentified molecule. Stepbystep interpretation of an ir spectrum authorstream. Presented below are some basic terms and examples designed to provide a background on which to build further knowledge through additional research and study. The guide arose from discussions held at the vam mass spectrometry. Calculate the molecular weights of all components which are used in your reaction mixture and all expected products drawing programs like chemsketch distributed freely by acdlabs can help.
Data system mass detector analyzer vacuum system source inlet region more precisely mass spectrometry determines the mass of a molecule. This simplified list will help you to interpret many spectra, however there are other mechanisms of fragmentation which cannot be covered in this brief tutorial. Spectra rga application bulletin 208 mks instruments. Interpretation mass spectral interpretation is not a trivial process. Using ms techniques to measure the ratio of 12 c to 14 c, one can determine the age of objects that incorporated 14 c into their structure such as once living fossils. Interpretation of infrared spectra, a practical approach 1 interpretation of infrared spectra, a practical approach john coates coates consulting, newtown, usa 1 introduction 1 2 the origins of the infrared spectrum 2 3 spectral interpretation by application of vibrational group frequencies 6 3. Most processes are very rapid, occurring within a few nano or microseconds. Great ux mmass is designed to be feature rich, yet still easy to use. When students ask what books to read on mass spectrometry, there are various excellent monographs, but the ideal textbook still seemed to be missing at least in my opinion. Finding the relative formula mass relative molecular mass from a mass spectrum is therefore trivial. Aists spectral database, which includes 1 h and c nmr spectra, as well as ir, uvvis, and mass spectra. Understanding mass spectra there are many different types of mass spectrometry ms detectors but the basic principles are the same in all cases.
Gas chromatographymass spectrometry gc ms interpretation of ei spectra jeremy keirsey ccic msp. Autotune provides information about the mass spectrometer only. Elemental compositions for selected ions in the spectrum of ia were determined using highresolution mass spectrometry, and precursor and product ion spectra for many of these ions were studied using msms. The book emphasizes the use of this important analytical technique in many different. The mass to charge ratio mz is used to describe ions observed in mass spectrometry. In mass spectrometry ms, the obvious concern is the actual masses of the atoms, molecules, or fragment thereof. Stay focused on your data interpretation, not on the software. Mass spectra is a plot of relative abundance against masstocharge ratio. It is also called as positive ion spectra or line spectra. Interpreting msms proteomics results the first thing i should say is that none of the material presented is original research done at proteome software but we do strive to make the tools presented. Microsoft word guide to interpretation of mass spectra. Ms is applied to fields as disparate as airport security, food and wine analysis, drug and explosives analys. Forensic drug identification by gas chromatography.
An introduction to mass spectrometry these pages have moved. Mass spectrometry in drug discovery, 2002,85124 even electron mass spectrometry with biomolecule applications by bryan m. Interpretation of mass spectra interpretation of ms. The program will optionally track the results of routine performance mixture runs such as the grob test mixture. The analytical data interchange format for mass spectrometry is a format for exchanging data. Mass spectrum is the balance of a series of competing and consecutive reactions 5456. If good inferences could be made, use the remainder of the mass spectrum to try to elucidate structural features or isomerism. Ham, john wiley and sons, hoboken, nj, 2011 the book is a patch quilt of some correct and good information, some information that is partially correct but twisted, and some information that is completely wrong. By convention, m is the numerical value for the mass of the ion and z is the numerical value for the charge of the ion. This peak if it appears will be the highest mass peak in the spectrum, except for isotope peaks. An application reference for spectral data and ionization probablility from mks spectra products. It will be your resort to maintain downloading guide interpretation of mass spectra, by fred w.
Spectra interpretation, mass spectrometry, organisch. Overviewmass spectrometry ms is a proven analytical method used to glean information about the chemical structure of a chemical sample. Chromatography mass spectrometry gcms as the preferred method for this examination. Mass spectral interpretation is the method employed to identify the chemical formula, characteristic fragment patterns and possible fragment ions from the mass spectra. Many mass spectrometry software packages can read or write andi files. Interpretation of mass spectra by mclafferty, fred w. Mclafferty sooner you get guide interpretation of mass spectra, by fred w. Pdf download interpretation of mass spectra, by fred w. A molecular mass spectrum a molecular mass spectrum is a plot of relative abundance of an ion vs. Mass spectrometry overview mass spectrometry is an analytic technique that utilizes the degree of deflection of charged particles by a magnetic field to find the relative masses of molecular ions and fragments. Mass spectrometry and interpreting mass spectra compound. Mass spectrometry is an important technique for analyzing proteins and other biomolecular compounds in biological samples. The chapter includes an introduction to the main ionisation techniques in mass spectrometry and the way the resulting fragments can be analysed.
With contributions from noted experts from europe and north america, mass spectrometry instrumentation, interpretation, and applications serves as a forum to introduce students to the whole world of mass spectrometry and to the many different perspectives that each scientific field brings to its use. In mass spectrometry, one generates ions from a sample to be analyzed. The key thing is the file that gets created by the program you want the program that generates a file called atune. Interpretation mass spectra starting points recommended steps for the interpretation of ei spectra. Before discussing fragmentation and interpretation, it is important to. The chapter includes an introduction to the main ionisation techniques in mass spectrometry and the way the resulting fragments can be. Provided you have a computer data base of mass spectra, any unknown spectrum can be computer analyzed and simply matched against the data base. Acquire a background spectrum before analysing the sample to. Such an approach is very useful for the interpretation of the mass spectra of inorganic.